RNDr. Stanislav Geidl, Ph.D.

2015

• ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

  SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš IONESCU Crina-Maria GEIDL Stanislav HORSKÝ Vladimír JAISWAL Deepti WIMMEROVÁ Michaela KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2015, volume: 43, edition: D1, DOI

2014

• Atomic charge based descriptors and their applications in QSAR

  SVOBODOVÁ VAŘEKOVÁ Radka GEIDL Stanislav SEHNAL David PRAVDA Lukáš JURKA Zdeněk IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Consistency of sugar structures and their annotation in the PDB

  JAISWAL Deepti SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• How the methodology of 3D structure preparation influences the quality of pKa prediction?

  GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka PETRUSEK Lukáš IONESCU Crina-Maria SEHNAL David KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Jaký vliv na přesnost QSPR modelů má metodika přípravy 3D struktury? Případová studie pro predikci pKa.

  GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka PETRUSEK Lukáš SEHNAL David KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Ligand structures in the Protein Data Bank – can we trust them?

  SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš JAISWAL Deepti WIMMEROVÁ Michaela KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

  SVOBODOVÁ VAŘEKOVÁ Radka JAISWAL Deepti SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2014, volume: 42, edition: W1, DOI

• MotiveValidator: software for validation of ligand and residue structures in biomolecular complexes

  SVOBODOVÁ VAŘEKOVÁ Radka JAISWAL Deepti SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Software

  Year: 2014

• ValidatorDB: database of validation results for ligands and non-standard residues from the Protein Data Bank

  SVOBODOVÁ VAŘEKOVÁ Radka JAISWAL Deepti SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Software

  Year: 2014

• Web server for the rapid calculation of empirical atomic charges with QM accuracy

  GEIDL Stanislav SEHNAL David IONESCU Crina-Maria SVOBODOVÁ VAŘEKOVÁ Radka PANT Purbaj KOČA Jaroslav

  Conference abstract

  Year: 2014, type: Conference abstract